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Publications:
PUBLICATIONS (peer-reviewed)
1. Sussman, M.R. and Firn, R. 1976. The synthesis of a radioactive cytokinin with high specific activity. Phytochemistry 15:153-155.
2. Sussman, M.R. and Kende, H. 1977. The synthesis and biological properties of 8-azido-benzyladenine, a potential cytokinin photoaffinity reagent. Planta 137:91-96.
3. Sussman, M.R. and Kende, H. 1978. Cytokinin binding sites in a particulate fraction from tobacco cells. Planta 140:251-259.
4. Gardner, G., Sussman, M.R. and Kende, H. 1978. In vitro cytokinin binding to a particulate cell fraction from protonemata of Funaria hygrometrica. Planta 143:67-73.
5. Sussman, M.R. and Gardner, G. 1980. Solubilization of the receptor for N-1 naphthylphthalmic acid. Plant Physiology 66:1074-1078.
6. Sussman, M.R. and Goldsmith, M.H.M. 1981. Auxin uptake and action of N-1-naphthylphthalmic acid in corn coleoptiles. Planta 151:15-25.
7. Sussman, M.R. and Goldsmith, M.H.M. 1981. The action of specific inhibitors of auxin transport on uptake of auxin and binding of N-1-naphthylphthalamic acid to a membrane site in maize coleoptiles. Planta 152:13-18.
8. Sussman, M.R. and Slayman, C.W. 1983. Modification of the Neurospora crassa plasma membrane [H+]-ATPase with N,N’-dicyclohexyl-carbodiimide. J. Biol. Chem. 258:1893-1843.
9. Sussman, M.R. 1984. Purification of the Neurospora crassa plasma membrane H+-ATPase by high pressure liquid chromatography in the presence of sodium dodecylsulfate. Analytical Biochemistry 142:210-214.
10. Surowy, T.K. and Sussman, M.R. 1986. Immunological cross-reactivity and inhibitor sensitivities of the plasma membrane from plants and fungi. Biochem. Biophys. Acta 848:24-34.
11. Katz, D.B. and Sussman, M.R. 1986. Inhibition and labeling of the plant plasma membrane H+-ATPase with N-ethylmaleimide. Plant Physiology 83:977-981.
12. Surowy, T.K. and Sussman, M.R. 1987. Molecular cloning of the plant plasma membrane H+-ATPase. Plant and Soil 99:185-196.
13. Schaller, G.E. and Sussman, M.R. 1987. Kinase-mediated phosphorylation of the oat plasma membrane proton pump. In: “Plant Membranes: Structure, Function, Biogenesis”. UCLA Symposium on Molecular and Cellular Biology, New Series, Volume 63. Editors, Christopher Leaver and Heaven Sze. Alan R. Liss, Inc., New York, NY.
14. Sussman, M.R., Strickler, J.E., Hager, K.M. and Slayman, C.W. 1987. Location of a DCCD-reactive glutamate residue in the N. crassa plasma membrane H+-ATPase. J. Biol. Chem. 262:4569-4597.
15. Sussman, M.R. and Surowy, T.K. 1987. Physiology and molecular biology of membrane ATPases. In: “Oxford Surveys of Plant Molecular and Cellular Biology, Volume 4, pp. 47-71. B.J. Miflin (ed.), Oxford University Press, Oxford, England. (Review)
16. Schaller, G.E. and Sussman, M.R. 1988. Phosphorylation of the plasma membrane H+-ATPase of higher plants by a calcium-stimulated protein kinase. Planta 173:509-518.
17. Schaller, G.E. and Sussman, M.R. 1988. Isolation and sequence of tryptic peptides from the oat plasma membrane H+-ATPase. Plant Physiology 86:512-516.
18. Katz, D.B., Sussman, M.R., Mierzwa, R.J. and Evert, R.F. 1988. Cytochemical localization of ATPase activity in oat roots localizes a plasma membrane-associated soluble phosphatase, not the proton pump. Plant Physiology 86:841-847.
19. Sussman, M.R. 1988. Purification of integral plasma membrane proteins by reverse-phase high performance liquid chromatography. Analytical Biochemistry 169:395-399.
20. Sussman, M.R. and Gabelman, W.H. 1989. Genetics aspects of mineral nutrition: Future challenges and directions. HortScience 24:591-594. (Review)
21. Harper, J.F. and Sussman, M.R. 1989. The proton ATPase multigene family in Arabidopsis thaliana. In: Plant Membrane Transport. J. Dainty et al, editors, Elsevier Science Publishers, Inc., Amsterdam, Netherlands.
22. Tate, B.F., Schaller, G.E., Sussman, M.R. and Crain, R.C. 1989. Characterization of a polyphosphoinositide phospholipase C from the plasma membrane of Avena sativa. Plant Physiology 91:1275-1279.
23. Harper, J.F., Surowy, T.K. and Sussman, M.R. 1989. Molecular cloning and sequence of cDNA encoding the plasma membrane proton pump (H+-ATPase) of Arabidopsis thaliana. Proc. Nat. Acad. Sci. 86:1234-1238.
24. Sussman, M.R. and Harper, J.F. 1989. Molecular biology of the plasma membrane of higher plants. The Plant Cell 1:953-960.
25. Harper, J.F., Manney, L., DeWitt, N., Yoo, M.H., and Sussman, M.R. 1990. The Arabidopsis thaliana plasma membrane H+-ATPase multigene family: genomic sequence and expression of a third isoform. J. Biol. Chem. 265:13601-13608.
26. DeWitt, N.D., Harper, J.F., and Sussman, M.R. 1991. Evidence for a plasma membrane proton pump in phloem cells of higher plants. The Plant Journal 1:121-128.
27. Reiter, R.S., Coors, J.G., Sussman, M.R., and Gabelman, W.H. 1991. Genetic analysis of tolerance to low-phosphorous stress in maize using restriction fragment length polymorphism. Theor. Appl. Genet. 82:561-568.
28. Harper, J.F., Sussman, M.R., Schaller, G.E., Putnam-Evans, C., Charbonneau, H. and Harmon, A.C. 1991. A calcium-dependent protein kinase with a regulatory domain that is similar to calmodulin. Science 252:951-954.
29. Sussman, M.R. 1991. Green genes in space and time. The New Biologist 3:559-564.
30. Schaller, G.E. Harmon, A.C. and Sussman, M.R. 1992. Characterization of a calcium and lipid-dependent protein kinases associated with the plasma membrane of oat. Biochemistry 31:1721-1727.
31. Brockman, J.L., Gross, S.D., Sussman, M.R. and Anderson, R.A. 1992. Cell cycle-dependent localization of casein kinase I to mitotic spindles. Proc. Natl. Acad. Sci. 89:9454-9458.
32. Sussman, M.R. 1992. A plethora of plant plasmalemma proton pumps. In: Transport and receptor proteins of plant membranes: molecular structure and function. Edited by D.T. Cooke and D.T. Clarkson, Plenum Press, NY and London.
33. Sussman, M.R. 1992. Shaking Arabidopsis thaliana. Science 256:619 (invited commentary).
34. Sussman, M.R. 1993. Phosphorylation of the plasma membrane proton pump. In: Post-translational modification in plants. Battey, N.H., Dickinson, H.G. and Hetherington, A.M. eds., Society for Experimental Biology, Seminar Series #53, Cambridge, University Press, Cambridge, England.
35. Sheahan, J.J., Ribeiro-Neto, L. and Sussman, M.R. 1993. Cesium-insensitive mutants of Arabidopsis thaliana. The Plant Journal 3:647-656.
36. Harper, J.F., Binder, B.M. and Sussman, M.R. 1993. A calcium-dependent protein kinase from Arabidopsis thaliana expressed in Escherichia coli. Biochemistry 32:3282-3290.
37. Sussman, M.R. 1994. Molecular analysis of the plant plasma membrane. Ann. Rev. Pl. Phys. Pl. Mol. Biol. 45:211-234.
38. Binder, B.M., Harper, J.F. and Sussman, M.R. 1994. Characterization of an Arabidopsis calmodulin-like domain protein kinase purified from Escherichia coli using an affinity sandwich technique. Biochemistry 33:2033-2041.
39. Harper, J.F., Manney, L. and Sussman, M.R. 1994. The plasma membrane H+-ATPase gene family in Arabidopsis: genomic sequence of AHA10 which is expressed primarily in developing seeds. Molec. Gen. Genet. 243: 244:572-587.
40. Sussman, M.R., DeWitt, N.D. and Harper, J.F. 1994. Calcium, protons and potassium as inorganic second messengers in the cytoplasm of plant cells. In: Arabidopsis, edited by C.W. Somerville and E. Meyerowitz, Cold Spring Harbor Laboratory Press.
41. Nakamura, R.L., McKendree, W.L., Hirsch, R.E., Sedbrook, J.C., Gaber, R.F. and Sussman, M.R. 1995. Expression of an Arabidopsis potassium channel gene in guard cells. Plant Physiology 109:371-374.
42. DeWitt, N.D. and Sussman, M.R. 1995. Immunocytological localization of an epitope-tagged plasma membrane proton pump (H+-ATPase) in phloem companion cells. The Plant Cell 7:2053-2067.
43. Sussman, M.R., Hrabak, E.M. and Satterlee, J.S. 1996. Calmodulin domain protein kinase. In: Guidebook to the Calcium Binding Proteins; Oxford University Press; M.R. Celio, editor.
44. Krysan, P.J., Young, J.C., Tax, F. and Sussman, M.R. 1996. Identification of T-DNA insertions within Arabidopsis genes involved in signal transduction and ion transport. Proc. Natl. Acad. Sci. 93:8145-8150.*
45. Hrabak, E.M., Dickmann, L.J., Satterlee, J.S. and Sussman, M.R. 1996. Characterization of eight new members of the calmodulin-like domain protein kinase gene family from Arabidopsis thaliana. Plant Molecular Biology 31:405-412.
46. DeWitt, N.D., Hong, B., Sussman, M.R. and Harper, J.F. 1996. Targeting of two Arabidopsis H+-ATPase isoforms to the plasma membrane, Plant Physiology 112:833-844.
47. Blazquez, Green, R., Nilsson, O., Sussman, M.R. and Weigel, D. 1998. Gibberellins promote flowering of Arabidopsis by activating the leafy promoter. The Plant Cell 10:791-800.
48. Satterlee, J.S., and Sussman, M.R. 1998. Unusual protein kinases in the plasma membrane of plants J. Membrane Biology 164:205-213.
49. Young, J.C., DeWitt, N.D., and Sussman, M.R. 1998. A transgene encoding a plasma membrane H+-ATPase that confers acid resistance in Arabidopsis thaliana seedlings. Genetics 149:501-507.
50. Hirsch, R.E., Lewis, B.D., Spalding, E.S., and Sussman, M.R. 1998. Genetic evidence for a nutritional role for plant potassium channels. Science 280:918-921.
51. Hirsch, R.E., and Sussman, M.R. 1999. Prospects for improving nutrient capture from soil by genetic manipulation in crop plants. Trends in Biotechnology 17:356-361.
52. Spalding, E.P., R.E., Hirsch, D.R. Lewis, Z. Qi, M.R. Sussman, and B.D. Lewis. 1999. Potassium uptake supporting plant growth in the absence of AKT1 channel activity. J. Gen. Physiol. 113:909-918.
53. Sussman, M.R. 1999. Pumping iron. Nature Biotechnology 17:230-231 (invited commentary)
54. Young, J.C., Krysan, P.J. and Sussman, M.R. 1999. Insertional mutagenesis in Arabidopsis using T-DNA. The Plant Cell 11:2283-2290.*
55. Singh-Gasson, S., Green, R.D., Yue, Y., Nelson, C., Blattner, F., Sussman, M.R. and Cerrina, F. 1999. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nature Biotechnology 17:974-978.
56. Gottwald, J.R., Krysan, P.J., Young, J.C., Evert, R.F. and Sussman, M.R. 2000. Genetic evidence for the in planta role of phloem specific plasma membrane sucrose transporters. Proc. Nat. Acad. Sci. 97:13979-13984.
57. The Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant, Arabidopsis thaliana. Nature. 408:796-815. (I am one of 132 co-authors of this collaborative sequencing paper-Ian Paulsen and I wrote the section entitled “Membrane Transport”.)
58. Vener, A.V., Harms, A., Sussman, M.R. and Vierstra, R.D. 2001. Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana. J. of Biol. Chem. 276:6959-6966.
59. Young, J.C., Krysan, P.J., and Sussman, M.R. 2001. Efficient screening of Arabidopsis T-DNA insertion lines using degenerate primers. Plant Physiology 125:513-518.
60. Sussman, M.R., Amasino, R.M., Young, J.C., Krysan, P.J., and Austin-Phillips, S. 2001. The Arabidopsis knockout facility at the University of Wisconsin-Madison. Plant Physiology 124:1465-1467.
61. Chen, J-G, Ullah, H., Young, J.C., Sussman, M.R. and Jones, A.M. 2001. Establishment of embryonic polarity mediated by Arabidopsis ABP1. Genes and Development 15:902-911.
62. Ullah, H., Chen, J-G, Young, J.C., Im, K-H, Sussman, M.R. and Jones, A.M. 2001. Modulation of cell proliferation by heterotrimeric G-proteins in Arabidopsis. Science 292:2066-2069.
63. Dennison, K.L., Robertson, W.R., Lewis, B.D., Hirsch, R.E., Sussman, M.R., Spalding, E.P. 2002. Functions of AKT1 and AKT2 potassium channels determined by studies of single and double mutants of Arabidopsis. Plant Physiology 127:1012-1019.
64. Krysan, P.J., Jester, P.J., Gottwald, J.R., and Sussman, M.R. 2002. An Arabidopsis MAPKK kinase gene family encodes essential positive regulators of cytokinesis. The Plant Cell 14:1109-1120.
65. Krysan, P.J., Young, J.C., Jester, P.J., Monson, S., Copenhaver, G., Preuss, D., and Sussman, M.R. 2002. Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis. OMICS: A Journal of Integrative Biology 6:163-174.
66. Nuwaysir, E.F., Huang, W., Albert, T.J., Singh, J., Nuwaysir, K., Pitas, A., Richmond, T., Gorski,, T., Berg J.P., Ballin, J., McCormick, M., Norton, J., Pollock, T., Sumwalt, T., Butcher, L., Porter, D., Molla, M., Hall, C., Blattner, F., Sussman, M.R., Wallace, R. L., Cerrina, F., Green,R. D., 2002. Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Research 12:1749-1755.
67. Maser, P., Eckelman, B., Vaidyanathan, R., Fairbairn, D.J., Kubo, M., Uozumi, N., Robertson, W., Sussman, M.R. and Schroeder, J. I. 2002 Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis thaliana by genetic disruption of the Na+ transporter AtHKT1. FEBS Letters 531:157-161.
68. Wu Z, Liang F, Hong B, Young JC, Sussman MR, Harper JF, Sze H. 2002 An endoplasmic reticulum-bound Ca2+/Mn2+ pump, ECA1, supports plant growth and confers tolerance to Mn2+ stress. Plant Physiol.130:128-37.
69. Aceti, D.J., Blommel, P.G., Endo, Y., Fox, B.G., Frederick, R.O., Hegeman, A.D., Jeon, W.B., Kimball, T.L., Lee, J.M., Newman, C.S., Peterson, F.C., Sawasaki, T., Seder, K.D., Sussman, M.R., Ulrich, E.L., Wrobel, R.L., Thao, S., Vinarov, D.A., Volkman, B.F., and Zhao, Q. 2002. Role of nucleic acid and protein manipulation technologies in high-throughput structural biology efforts. In: Biopolymers, Vol.4: Polyamides and complex proteinaceous materials (Part B). Steinbuchel, A. Ed. Wiley-VCH Verlag GmbH, Weinheim, Germany.
70. Pischke, M., Jones, L.G., Otsuga, D., Fernandez, D., Drews, G.N. and Sussman, M.R. 2002. An Arabidopsis histidine kinase is essential for megagametogenesis. PNAS 99:15800-15805.
71. Cerrina, F., Blattner, F., Huang, W., Hue, Y., Green, R., Singh-Gasson, S., and Sussman, M. 2002. Biological Lithography: Development of a Maskless Microarray Synthesizer for DNA Chips. Microelectronic Engineering. 61-62:33-40.
72. Chan, C. W., Schorrak, L.M., Smith, R. K. Jr., Bent, A.F., Sussman, M. R. 2003. A cyclic nucleotide-gated ion channel, CNGC2, is crucial for plant development and adaptation to calcium stress. Plant Physiol. 132:728-731.
73. Baxter, I., Tchiev, J., Sussman, M.R., Boutry, M., Palmgren, M., Gribskov, M., Harper,, J.F. and Axelsen, K.B. 2003. Genomic Comparison of P-type ATPase ion pumps in Arabidopis and rice. Plant Physiology 132:618-628.
74. Richmond, K.E. and Sussman, M.R. 2003. Got Silicon? The non-essential, beneficial plant nutrient. Current Opinions in Plant Biology 6:268-272.
75. Hrabak, E.M., Chan, C.W.M., Gribskov, M., Harper, J.F., Choi, J.H., Halford, N., Kudla, J., Luan, S., Nimmo, H.G., Sussman, M.R., Thomas, M., Walker-Simmons, K., Zhu, J-K., and Harmon, A.C. 2003. The Arabidopsis CDPK-SnRK Superfamily of Protein Kinases. Plant Physiology 132:666-680.
76. Sussman, M.R., Hegeman, A.D., Harms, A.C. and Nelson, C.J. 2003 Chapter 19: Proteomics and embryonic stem cells. In: Human Embryonic Stem Cells, Eds: J. Odrico, R. Pederson and S-C Zhang, Bios Scientific Publishers Limited, Oxford, UK.
77. Hegeman, A.D., Harms, A.C., Bunner, A.E., Harper, J.F. and Sussman, M.R. 2004 An isotope labeling strategy for quantifying the degree of phosphorylation at multiple sites in proteins. Journal of the American Society for Mass Spectrometry 15:647-653.
78. Higuchi, M., Pischke, M. S., Mahonen, A. P., Miyawaki, K., Hashimoto, Y., Seki, M., Kobayashi, M., Shinozaki, K., Kato, T., Tabata, S., Helariutta, Y., Sussman, M. R., and Kakimoto, T. 2004. In planta functions of the Arabidopsis cytokinin receptor family. Proc. Natl. Acad. Sci. 101:8821-8826.
79. Bingman, Craig A., Kenneth A. Johnson, Francis C. Peterson, Ronnie O. Frederick, Qin Zhao, Sandy Thao, Brian G. Fox, Brian F. Volkman, Won Bae Jeon, David W. Smith, Craig S. Newman, Eldon L. Ulrich, Adrian Hegeman, Michael R. Sussman, John L. Markley, and George N. Phillips, Jr. Crystal Structure of the Protein from Gene At3g17210 of Arabidopsis thaliana, PROTEINS: Structure, Function, and Genetics 57:218-220 (2004).
80. Smith, David W., Kenneth A. Johnson, Craig A. Bingman, David J. Aceti, Paul G. Blommel, Russell L. Wrobel, Ronnie O. Frederick, Qin Zhao, Hassan Sreenath, Brian G. Fox, Brian F. Volkman, Won Bae Jeon, Craig S. Newman, Eldon L. Ulrich, Adrian D. Hegeman, Todd Kimball, Sandy Thao, Michael R. Sussman, John L. Markley, and George N. Phillips Jr. Crystal Structure of At2g03760, a Putative Steroid Sulfotransferase from Arabidopsis thaliana‡, PROTEINS: Structure, Function, and Genetics, published online August, 2004.
81. Richmond, K.E., Li, M.H., Rodesch, M.J., Patel, M., Lowe, A.M., Kim, C., Chu, L.L., Venkataramaian, N., Kaysen, J., Belshaw, P.J., Sussman, M.R and Cerrina, F. 2004 Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis. Nucleic Acids Research 32:1-8.
82. Robertson, W.R., Clark, K., Young, J.C., and Sussman, M.R., 2004, An Arabidopsis thaliana Plasma Membrane Proton Pump is Essential for Pollen Development, Genetics 168:1677-1687.
83. Jeon, Won-Bae David J. Aceti, Craig A. Bingman, Frank C. Vojtik, Andrew C. Olson, Jason M. Ellefson, Janet E. McCombs, Hassan K. Sreenath, Paul G. Blommel, Kory D. Seder, Blake W. Buchan, Brendan T. Burns, Holalkere V. Geetha, Andrew C. Harms, Greg Sabat, Michael R. Sussman, Brian G. Fox, and George N. Phillips, Jr. 2005. High-Throughput Purification and Quality Assurance of Arabidopsis thaliana Proteins for Eukaryotic Structural Genomics, J. Struct. Funct. Genomics, 6:143-147.
84. Viktor Stolc, Manoj Pratim Samanta, Waraporn Tongprasit, Himanshu Sethi, Shoudan Liang, David C. Nelson, Adrian Hegeman, Clark Nelson, David Rancour, Sebastian Bednarek, Eldon L. Ulrich, Qin Zhao, Russell L. Wrobel, Craig S. Newman, Brian G. Fox, George N. Phillips, Jr., John L. Markley, and Michael R. Sussman, 2005, “Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays”, Proc. Natl. Acad. Sci. 102: 4453-4458.
85. Binkowski, B.F., Richmond, K.E., Kaysen, J., Sussman, M.R. and Belshaw, P.J. 2005 “Correcting errors in synthetic DNA through consensus shuffling”, Nucleic Acids Research 33:(e55)1-8.
86. Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, Hruby D, Jeon WB, Kimball T, Kunert J, Markley JL, Newman C, Olson A, Peterson FC, Phillips GN Jr, Primm J, Ramirez B, Rosenberg NS, Runnels M, Seder K, Shaw J, Smith DW, Sreenath H, Song J, Sussman MR, Thao S, Troestler D, Tyler E, Tyler R, Ulrich E, Vinarov D, Vojtik F, Volkman BF, Wesenberg G, Wrobel RL, Zhang J, Zhao Q, Zolnai Z. 2005 X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. Proteins. 61:206-8.
87. Barnard, B., Sussman, M., Nienhuis, J,m and Krysan, P. 2006. DNA chips for the classroom laboratory. Biochemistry and Molecular Biology Education (in press)
88. Bitto E, Bingman CA, Allard ST, Wesenberg GE, Aceti DJ, Wrobel RL, Frederick RO, Sreenath H, Vojtik FC, Jeon WB, Newman CS, Primm J, Sussman MR, Fox BG, Markley JL, Phillips GN Jr. The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 May 1;61(Pt 5):469-72.
89. Pischke MS, Huttlin EL, Hegeman AD, Sussman MR. A transcriptome-based characterization of habituation in plant tissue culture. Plant Physiol. 2006 Apr;140(4):1255-78.
90. Hegeman AD, Rodriguez M, Han BW, Uno Y, Phillips GN Jr, Hrabak EM, Cushman JC, Harper JF, Harmon AC, Sussman MR. A phyloproteomic characterization of in vitro autophosphorylation in calcium-dependent protein kinases. Proteomics. 2006 Jun;6(12):3649-64.
91. Mähönen AP, Higuchi M, Törmäkangas K, Miyawaki K, Pischke MS, Sussman MR, Helariutta Y, Kakimoto T. Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis. Curr Biol. 2006 Jun 6;16(11):1116-22.
92. Nelson CJ, Hegeman AD, Harms AC, Sussman MR. A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling. Mol Cell Proteomics. 2006 Aug;5(8):1382-95.
93. Markley JL, Anderson ME, Cui Q, Eghbalnia HR, Lewis IA, Hegeman AD, Li J, Schulte CF, Sussman MR, Westler WM, Ulrich EL, Zolnai Z. New bioinformatics resources for metabolomics. Pac Symp Biocomput. 2007;:157-68.
94. Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy. J Proteome Res. 2007 Jan;6(1):392-8.
95. Nelson CJ, Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Implications of 15N-metabolic labeling for automated peptide identification in Arabidopsis thaliana. Proteomics. 2007 Apr;7(8):1279-92.
96. Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana. Mol Cell Proteomics. 2007 May;6(5):860-81.
97. McIlwain S, Page D, Huttlin EL, Sussman MR. Using dynamic programming to create isotopic distribution maps from mass spectra. Bioinformatics. 2007 Jul 1;23(13):i328-36.
98. Nelson DC, Wohlbach DJ, Rodesch MJ, Stolc V, Sussman MR, Samanta MP. Identification of an in vitro transcription-based artifact affecting oligonucleotide microarrays. FEBS Lett. 2007 Jul 24;581(18):3363-70.
99. Hegeman AD, Schulte CF, Cui Q, Lewis IA, Huttlin EL, Eghbalnia H, Harms AC, Ulrich EL, Markley JL, Sussman MR. Stable isotope assisted assignment of elemental compositions for metabolomics. Anal Chem. 2007 Sep 15;79(18):6912-21.
100. Lecchi S, Nelson CJ, Allen KE, Swaney DL, Thompson KL, Coon JJ, Sussman MR, Slayman CW. Tandem phosphorylation of Ser-911 and Thr-912 at the carboxy terminus of yeast plasma-membrane H+-ATPase leads to glucose-dependent activation. J Biol Chem. 2007 Oct 11;
101. Lewis IA, Schommer SC, Hodis B, Robb KA, Tonelli M, Westler WM, Sussman MR, Markley JL. Method for Determining Molar Concentrations of Metabolites in Complex Solutions from Two-Dimensional (1)H-(13)C NMR Spectra. Anal Chem. 2007 Nov 7;
102. Mock T, Samanta MP, Iverson V, Berthiaume C, Robison M, Holtermann K, Durkin C, Bondurant SS, Richmond K, Rodesch M, Kallas T, Huttlin EL, Cerrina F, Sussman MR, Armbrust EV. Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. Proc. Natl. Acad. Sci U.S.A. 2008 Jan 22;
103. Cui Q, Lewis IA, Hegeman AD, Anderson ME, Li J, Schulte CF, Westler WM, Eghbalnia HR, Sussman MR, Markley JL. Metabolite identification via the Madison Metabolomics Consortium Database. Nat. Biotechnol. 2008 Feb; 26(2):162-4.
104. Chan CW, Wohlback DJ, Rodesch MJ, Sussman MR. Transcriptional changes in response to growth of Arabidopsis in high external calcium. FEBS Lett. 2008 Mar 19, 582(6):967-76.
105. Wohlbach DJ, Quirino BF, Sussman MR. Analysis of the Arabidopsis histidine kinase ATHK1 reveals a connection between vegetative osmotic stress sensing and seed maturation. Plant Cell. 2008 April 25.
106. Haruta M, Monshausen G, Gilroy S, Sussman MR. A cytoplasmic Ca2+ functional assay for identifying and purifying endogenous cell signaling peptides in Arabidopsis seedlings: identification of AtRALF1 peptide. Biochemistry. 2008 Jun 17;47(24):6311-21.
107. McIlwain S, Page D, Huttlin EL, Sussman MR. Matching isotopic distributions from metabolically labeled samples. Bioinformatics. 2008 Jul 1;24(13):i339-47.
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Notes: Reference 44 is been listed as one of the top six cited Plant Biology papers in PNAS
Reference 54 is an ISI ‘hot’ citation.
Reference 94 was the 3rd most cited paper in J. Proteome Research for 2007.